Dr. Reto Burri
Former principle investigator in the Population Ecology Group with focus on speciation, hybridization and parallel evolution in wheatears.
Western Black-eared Wheatear (Oenanthe hispanica)
Image: Reto Burri
Publications from Jena (2016-2020)
Lutgen, D., Ritter, R., Olsem, R.-A., Schielzeth, H., Gruselius, J., Ewels, P., García, J.T., Shirihai, H., Schweizer, M., Suh, A. & Burri, R. (2020). Linked-read sequencing enables haplotype-resolved resequencing at population scale. Molecular Ecology Resources 20: 1311-1322. doi: 10.1111/1755-0998.13192External link
Gaigher, A., Burri, R., San-Jose, L.M., Roulin, A. & Fumagalli, L. (2019). Lack of statistical power as a major limitation in understanding MHC‐mediated immunocompetence in wild vertebrate populations. Molecular Ecology 28: 5115-5132. doi: 10.1111/mec.15276External link
Schweizer, M., Warmuth, V.M., Alaei Kakhki, N., Aliabadian, M., Förschler, M., Shirihai, H., Ewels, P., Gruselius, J., Olsen, R.A., Schielzeth, H., Suh, A. & Burri, R. (2019). Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats. Molecular Phylogenetics and Evolution 139: 106568. doi: 10.1016/j.ympev.2019.106568External link
Schweizer, M., Warmuth, V., Alaei Kakhki, N., Aliabadian, M., Förschler, M., Shirihai, H., Suh, A. & Burri, R. (2019). Parallel plumage colour evolution and introgressive hybridization in wheatears. Journal of Evolutionary Biology 31: 100-110. doi: 10.1111/jeb.13401External link
Burri, R. (2017). Interpreting differentiation landsacpes in the light of long-term linked selection. Evolution Letters doi:10.1002/evl3.14External link
Burri, R. (2017). Dissecting differentiation landscapes: a linked selection's perspective. Journal of Evolutionary Biology 30:150-1505. doi:10.1111/jeb.13108External link
Burri, R. (2017). Linked selection, demography, and the evolution of correlated genomic landscapes in birds and beyond. Molecular Ecology 26(15):3853–3856. doi:10.1111/mec.14167External link
Goebel, J., Promerová, M., Bonadonn, F., McKoy, K.D. Serbielle, C., Standh, M., Yannic, G., Burri, R.*, & Fumagalli, L.* (2017) *joint senior authors. 100 million years of multigene family evolution: origin and evolution of the avian MHC class IIB. BMC Genomics 18(1): 40. doi:10.1186/s12864-017-3839-7External link
Kawakami, T., Mugal, C. F., Suh, A., Nater, A., Burri, R., Smeds, L. & Ellegren, H. (in press). Wholegenome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of finescale recombination rate variation in birds. Molecular Ecology doi:10.1111/mec.14197 External link
Vijay, N., Weissensteir, M., Burri, R., Kawakami, T., Ellegren, H. & Wolf, J. (in press). Genomewide patterns of variation in genetic diversity are shared among populations, species and higher order taxa. Molecular Ecology doi:10.1111/mec.14195 External link
Dutoit, L., Vijay, N., Mugal, C. F., Bossu, C. M., Burri, R., Wolf, J. & Ellegren, H. (in press). Covariation in levels of nucleotide diversity in homologus regions of the avian genome long after completion of lineage sorting. Proceedings of the Royal Society B 284 (1849), 2016756. doi:10.1098/rspb.2016.2756 External link
Promerová, M., Alavioon, G., Tusso, S., Burri, R. & Immler, S. (2017). No evidence for transmission ratio distortion in MHC class II in the Atlantic salmon Salmo salar. Heredity 118: 563–567. doi:10.1038/hdy.2016.129External link
Dutoit, L., Burri, R., Nater, A., Mugal, C. F. & Ellegren, H. (2017). Genomic distribution and estimation of nucleotide diversity in natural populations: perspectives from the collared flycatcher (Ficedula albicollis) genome. Molecular Ecology Resources 17: 586-597. doi:10.1111/1755-0998.12602External link
Gaigher, A., Burri, R., Gharib, W., Taberlet, P., Roulin, A. & Fumagalli, L. (2016). Family-assisted inference of the genetic architecture of MHC variation. Molecular Ecology Resources 16: 1353-1364. doi:10.1111/1755-0998.12537External link
Uebbing, S., Künstner, A., Mäkinen, H., Backström, N., Bolivar, P., Burri, R., Dutoit, L., Mugal, C.F., Nater, A., Bronwen, A., Flicek, P., Martin, F.J., Searle, S.M.J. & Ellegren, H. (2016). Divergence in gene expression within and between two closely related flycatcher species. Molecular Ecology 25: 2015-2028. doi:10.1111/mec.13596External link
Nadachowska-Brzyska, K., Burri, R., Smeds, L. & Ellegren, H. (2016). PSMC-analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers. Molecular Ecology 25: 1058-172. doi:10.1111/mec.13540External link
Burri, R., Antoniazza, S., Gaigher, A., Ducrest, A.-L., Simon, C., The European Barn Owl Network, Fumagalli, L., Goudet, J. & Roulin, A. (2016). The genetic basis of color-related local adaptation in a ring-like colonization around the Mediterranean. Evolution 70: 140-153. doi:10.1111/evo.12824External link